|
PheCAP-package
|
High-Throughput Phenotyping with EHR using a Common Automated Pipeline |
|
PhecapData()
|
Define or Read Datasets for Phenotyping |
|
PhecapSurrogate()
|
Define a Surrogate Variable used in
Surrogate-Assisted Feature Extraction (SAFE) |
|
ehr_data
|
A Synthetic EHR Dataset |
|
phecap_generate_dictionary_file()
|
Generate a Dictionary File for Note Parsing |
|
phecap_perform_majority_voting()
|
Perform Majority Voting on the CUIs from Multiple Knowledge Sources |
|
phecap_plot_roc_curves()
|
Plot ROC and Related Curves for Phenotyping Models |
|
phecap_predict_phenotype()
|
Predict Phenotype |
|
phecap_run_feature_extraction()
|
Run Surrogate-Assisted Feature Extraction (SAFE) |
|
phecap_train_phenotyping_model()
|
Train Phenotyping Model using the Training Labels |
|
phecap_validate_phenotyping_model()
|
Validate the Phenotyping Model using the Validation Labels |