Natural Language Processing
- NILE
Fast natural language processing for electronic health records
- EXTEND [ GitHub ]
Extraction of numerical data from electronic medical records
- CHANL [ GitHub ]
Chart review tool powered by natural language processing
Electronic Health Records
- PheCAP [ GitHub | CRAN ]
High-throughput phenotyping using a common semi-supervised approach
- PheNorm [ GitHub | CRAN ]
Phenotyping algorithm that does not require expert-labeled samples for training
- MAP [ GitHub | CRAN ]
High-throughput multimodal automated phenotyping
- sureLDA [ GitHub | CRAN ]
Multidisease automated phenotyping method for the electronic health records
- KESER [ GitHub ]
Clinical knowledge extraction via sparse embedding regression
- SCORNET [ GitHub | CRAN ]
Semi-supervised calibration of risk with noisy event times
- SAMGEP [ GitHub | CRAN ]
Semi-supervised adaptive Markov Gaussian embedding process
- MASTA [ GitHub ]
Multi-modal automated survival time annotation
High Dimensional Inference
- StructureMC [ GitHub | CRAN ]
Structured matrix completion with applications to genomic data integration
- solid [ GitHub ]
Divide-and-conquer method for sparse risk prediction and evaluation
- dcalasso [ GitHub ]
Fast divide-and-conquer sparse Cox regression
- SRAT [ GitHub ]
Sequence robust association test for familial data