High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP)

Overview

Implement surrogate-assisted feature extraction (SAFE) and common machine learning approaches to train and validate phenotyping models. Background and details about the methods can be found at Zhang et al. (2019), Yu et al. (2016) and Liao et al. (2015).

Installation

Install development version from GitHub:

# install.packages("devtools")
devtools::install_github("celehs/PheCAP")

Install from SOURCE CODE

Get Started

Follow the main steps, and try the R codes from the simulated data and real EHR data examples.

References